Detailed information of SNP:
|
SNP ID:
sf0619650374(Gbrowse)
Chromosome: chr06 Position: 19650374 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 59.66% | 40.34% |
| All Indica | 798 | 93.98% | 6.02% |
| All Japonica | 497 | 2.21% | 97.79% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 95.19% | 4.81% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619650374 | T->A | LOC_Os06g33780(LOC_Os06g33780.1) | INTRON |