Detailed information of SNP:
|
SNP ID:
sf0619652509(Gbrowse)
Chromosome: chr06 Position: 19652509 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 70.15% | 29.85% |
| All Indica | 799 | 95.24% | 4.76% |
| All Japonica | 497 | 25.75% | 74.25% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 32.24% | 67.76% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619652509 | T->C | INTERGENIC | None |