Detailed information of SNP:
|
SNP ID:
sf0619657719(Gbrowse)
Chromosome: chr06 Position: 19657719 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1388 | 63.98% | 36.02% |
| All Indica | 798 | 97.74% | 2.26% |
| All Japonica | 481 | 2.91% | 97.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 320 | 2.19% | 97.81% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 7 | 42.86% | 57.14% |
| Intermediate | 35 | 68.57% | 31.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619657719 | G->A | INTERGENIC | None |