Detailed information of SNP:
|
SNP ID:
sf0619678608(Gbrowse)
Chromosome: chr06 Position: 19678608 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 92.91% | 7.09% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 475 | 84.00% | 16.00% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 314 | 78.98% | 21.02% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 86.57% | 13.43% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619678608 | G->A | LOC_Os06g33820(LOC_Os06g33820.1) | Non-Synonymous SNP |