Detailed information of SNP:
|
SNP ID:
sf0619680043(Gbrowse)
Chromosome: chr06 Position: 19680043 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1394 | 56.46% | 43.54% |
| All Indica | 778 | 89.97% | 10.03% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 65 | 84.62% | 15.38% |
| Indica I | 360 | 89.17% | 10.83% |
| Indica II | 209 | 90.43% | 9.57% |
| Indica Intermediate | 209 | 90.91% | 9.09% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619680043 | G->A | LOC_Os06g33820(LOC_Os06g33820.1) | Non-Synonymous SNP |