Detailed information of SNP:
|
SNP ID:
sf0619684781(Gbrowse)
Chromosome: chr06 Position: 19684781 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1290 | 60.00% | 40.00% |
| All Indica | 684 | 82.75% | 17.25% |
| All Japonica | 489 | 22.29% | 77.71% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 306 | 77.78% | 22.22% |
| Indica II | 199 | 88.94% | 11.06% |
| Indica Intermediate | 179 | 84.36% | 15.64% |
| Temperate Japonica | 327 | 27.83% | 72.17% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 38 | 57.89% | 42.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619684781 | A->C | INTERGENIC | None |