Detailed information of SNP:
|
SNP ID:
sf0619696890(Gbrowse)
Chromosome: chr06 Position: 19696890 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1363 | 70.58% | 29.42% |
| All Indica | 744 | 47.45% | 52.55% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 344 | 41.86% | 58.14% |
| Indica II | 199 | 41.71% | 58.29% |
| Indica Intermediate | 201 | 62.69% | 37.31% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619696890 | G->T | INTERGENIC | None |