Detailed information of SNP:
|
SNP ID:
sf0619699085(Gbrowse)
Chromosome: chr06 Position: 19699085 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 82.00% | 18.00% |
| All Indica | 799 | 69.84% | 30.16% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 72.53% | 27.47% |
| Indica II | 213 | 69.48% | 30.52% |
| Indica Intermediate | 211 | 65.40% | 34.60% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619699085 | C->T | INTERGENIC | None |