Detailed information of SNP:
|
SNP ID:
sf0619709626(Gbrowse)
Chromosome: chr06 Position: 19709626 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 69.71% | 30.29% |
| All Indica | 795 | 96.48% | 3.52% |
| All Japonica | 496 | 25.40% | 74.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 97.59% | 2.41% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 334 | 32.63% | 67.37% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619709626 | C->T | INTERGENIC | None |