Detailed information of SNP:
|
SNP ID:
sf0619709659(Gbrowse)
Chromosome: chr06 Position: 19709659 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 55.90% | 44.10% |
| All Indica | 797 | 95.36% | 4.64% |
| All Japonica | 496 | 0.60% | 99.40% |
| Aus | 66 | 10.61% | 89.39% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619709659 | G->A | INTERGENIC | None |