Detailed information of SNP:
|
SNP ID:
sf0619709674(Gbrowse)
Chromosome: chr06 Position: 19709674 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 60.41% | 39.59% |
| All Indica | 797 | 94.98% | 5.02% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 96.52% | 3.48% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619709674 | G->A | INTERGENIC | None |