Detailed information of SNP:
|
SNP ID:
sf0619710524(Gbrowse)
Chromosome: chr06 Position: 19710524 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 67.33% | 32.67% |
| All Indica | 796 | 92.84% | 7.16% |
| All Japonica | 496 | 21.98% | 78.02% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 334 | 28.44% | 71.56% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619710524 | A->G | INTERGENIC | None |