Detailed information of SNP:
|
SNP ID:
sf0619716221(Gbrowse)
Chromosome: chr06 Position: 19716221 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 59.52% | 40.48% |
| All Indica | 788 | 92.01% | 7.99% |
| All Japonica | 493 | 4.87% | 95.13% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 369 | 94.04% | 5.96% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 208 | 88.94% | 11.06% |
| Temperate Japonica | 332 | 4.82% | 95.18% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619716221 | T->C | LOC_Os06g33890(LOC_Os06g33890.1) | Synonymous |