Detailed information of SNP:
|
SNP ID:
sf0619718275(Gbrowse)
Chromosome: chr06 Position: 19718275 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1386 | 64.07% | 35.93% |
| All Indica | 782 | 94.12% | 5.88% |
| All Japonica | 484 | 9.50% | 90.50% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 368 | 95.92% | 4.08% |
| Indica II | 210 | 92.86% | 7.14% |
| Indica Intermediate | 204 | 92.16% | 7.84% |
| Temperate Japonica | 322 | 9.32% | 90.68% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619718275 | G->A | LOC_Os06g33900(LOC_Os06g33900.1) | Synonymous |