Detailed information of SNP:
|
SNP ID:
sf0619725122(Gbrowse)
Chromosome: chr06 Position: 19725122 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1341 | 68.75% | 31.25% |
| All Indica | 725 | 49.52% | 50.48% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 66 | 39.39% | 60.61% |
| Indica I | 331 | 41.69% | 58.31% |
| Indica II | 196 | 54.08% | 45.92% |
| Indica Intermediate | 198 | 58.08% | 41.92% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619725122 | C->T | INTERGENIC | None |