Detailed information of SNP:
|
SNP ID:
sf0619727476(Gbrowse)
Chromosome: chr06 Position: 19727476 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1367 | 57.57% | 42.43% |
| All Indica | 768 | 40.23% | 59.77% |
| All Japonica | 478 | 91.63% | 8.37% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 352 | 22.44% | 77.56% |
| Indica II | 212 | 68.87% | 31.13% |
| Indica Intermediate | 204 | 41.18% | 58.82% |
| Temperate Japonica | 317 | 91.17% | 8.83% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619727476 | G->A | INTERGENIC | None |