Detailed information of SNP:
|
SNP ID:
sf0619746682(Gbrowse)
Chromosome: chr06 Position: 19746682 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 88.92% | 11.08% |
| All Indica | 799 | 96.50% | 3.50% |
| All Japonica | 478 | 77.20% | 22.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 316 | 69.30% | 30.70% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619746682 | T->C | INTERGENIC | None |