Detailed information of SNP:
|
SNP ID:
sf0619748413(Gbrowse)
Chromosome: chr06 Position: 19748413 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 73.68% | 26.32% |
| All Indica | 797 | 77.92% | 22.08% |
| All Japonica | 497 | 76.26% | 23.74% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 373 | 92.76% | 7.24% |
| Indica II | 213 | 63.85% | 36.15% |
| Indica Intermediate | 211 | 65.88% | 34.12% |
| Temperate Japonica | 335 | 68.36% | 31.64% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619748413 | C->T | INTERGENIC | None |