Detailed information of SNP:
|
SNP ID:
sf0619754657(Gbrowse)
Chromosome: chr06 Position: 19754657 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 61.97% | 38.03% |
| All Indica | 794 | 79.85% | 20.15% |
| All Japonica | 496 | 28.02% | 71.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 93.58% | 6.42% |
| Indica II | 210 | 63.81% | 36.19% |
| Indica Intermediate | 210 | 71.43% | 28.57% |
| Temperate Japonica | 334 | 35.93% | 64.07% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619754657 | T->C | INTERGENIC | None |