Detailed information of SNP:



SNP ID: sf0619754657(Gbrowse)

Chromosome: chr06

Position: 19754657
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1412 61.97% 38.03%
All Indica794 79.85% 20.15%
All Japonica496 28.02% 71.98%
Aus67 100.00% 0.00%
Indica I374 93.58% 6.42%
Indica II210 63.81% 36.19%
Indica Intermediate210 71.43% 28.57%
Temperate Japonica334 35.93% 64.07%
Tropical Japonica94 7.45% 92.55%
Japonica Intermediate68 17.65% 82.35%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 51.22% 48.78%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0619754657 T->C INTERGENIC None