Detailed information of SNP:
|
SNP ID:
sf0619762329(Gbrowse)
Chromosome: chr06 Position: 19762329 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 50.56% | 49.44% |
| All Indica | 797 | 22.71% | 77.29% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 7.75% | 92.25% |
| Indica II | 213 | 38.03% | 61.97% |
| Indica Intermediate | 210 | 33.81% | 66.19% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619762329 | C->T | INTERGENIC | None |