Detailed information of SNP:
|
SNP ID:
sf0619790676(Gbrowse)
Chromosome: chr06 Position: 19790676 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 73.27% | 26.73% |
| All Indica | 786 | 53.56% | 46.44% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 50.41% | 49.59% |
| Indica II | 212 | 43.40% | 56.60% |
| Indica Intermediate | 207 | 69.57% | 30.43% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619790676 | C->A | INTERGENIC | None |