Detailed information of SNP:
|
SNP ID:
sf0619801731(Gbrowse)
Chromosome: chr06 Position: 19801731 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 83.71% | 16.29% |
| All Indica | 781 | 71.83% | 28.17% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 366 | 78.96% | 21.04% |
| Indica II | 211 | 69.19% | 30.81% |
| Indica Intermediate | 204 | 61.76% | 38.24% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619801731 | G->A | LOC_Os06g34000(LOC_Os06g34000.1) | Non-Synonymous SNP |