Detailed information of SNP:
|
SNP ID:
sf0619804970(Gbrowse)
Chromosome: chr06 Position: 19804970 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1392 | 83.12% | 16.88% |
| All Indica | 772 | 70.60% | 29.40% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 362 | 77.35% | 22.65% |
| Indica II | 208 | 69.23% | 30.77% |
| Indica Intermediate | 202 | 59.90% | 40.10% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619804970 | T->G | INTERGENIC | None |