Detailed information of SNP:
|
SNP ID:
sf0619805024(Gbrowse)
Chromosome: chr06 Position: 19805024 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1361 | 67.67% | 32.33% |
| All Indica | 744 | 90.86% | 9.14% |
| All Japonica | 495 | 27.88% | 72.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 340 | 89.71% | 10.29% |
| Indica II | 203 | 89.16% | 10.84% |
| Indica Intermediate | 201 | 94.53% | 5.47% |
| Temperate Japonica | 333 | 35.14% | 64.86% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619805024 | T->C | INTERGENIC | None |