Detailed information of SNP:
|
SNP ID:
sf0619805656(Gbrowse)
Chromosome: chr06 Position: 19805656 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 53.92% | 46.08% |
| All Indica | 764 | 83.38% | 16.62% |
| All Japonica | 494 | 2.23% | 97.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 360 | 86.11% | 13.89% |
| Indica II | 204 | 81.37% | 18.63% |
| Indica Intermediate | 200 | 80.50% | 19.50% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 91 | 4.40% | 95.60% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 38.46% | 61.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619805656 | A->G | LOC_Os06g34010(LOC_Os06g34010.1) | INTRON |