Detailed information of SNP:
|
SNP ID:
sf0619805830(Gbrowse)
Chromosome: chr06 Position: 19805830 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 52.65% | 47.35% |
| All Indica | 798 | 63.66% | 36.34% |
| All Japonica | 497 | 28.37% | 71.63% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 70.13% | 29.87% |
| Indica II | 212 | 62.26% | 37.74% |
| Indica Intermediate | 211 | 53.55% | 46.45% |
| Temperate Japonica | 335 | 35.82% | 64.18% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619805830 | T->C | LOC_Os06g34010(LOC_Os06g34010.1) | Non-Synonymous SNP |