Detailed information of SNP:
|
SNP ID:
sf0619806731(Gbrowse)
Chromosome: chr06 Position: 19806731 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 80.57% | 19.43% |
| All Indica | 796 | 66.71% | 33.29% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 72.65% | 27.35% |
| Indica II | 213 | 66.20% | 33.80% |
| Indica Intermediate | 210 | 56.67% | 43.33% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619806731 | G->A | LOC_Os06g34010(LOC_Os06g34010.1) | INTRON |