Detailed information of SNP:
|
SNP ID:
sf0619825209(Gbrowse)
Chromosome: chr06 Position: 19825209 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1329 | 96.61% | 3.39% |
| All Indica | 712 | 93.68% | 6.32% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 321 | 90.34% | 9.66% |
| Indica II | 190 | 99.47% | 0.53% |
| Indica Intermediate | 201 | 93.53% | 6.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619825209 | A->G | LOC_Os06g34040(LOC_Os06g34040.1) | INTRON |