Detailed information of SNP:
|
SNP ID:
sf0619833585(Gbrowse)
Chromosome: chr06 Position: 19833585 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 64.99% | 35.01% |
| All Indica | 797 | 97.24% | 2.76% |
| All Japonica | 497 | 6.84% | 93.16% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 99.46% | 0.54% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 8.06% | 91.94% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619833585 | G->A | LOC_Os06g34060(LOC_Os06g34060.1) | INTRON |