Detailed information of SNP:
|
SNP ID:
sf0619860021(Gbrowse)
Chromosome: chr06 Position: 19860021 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 64.28% | 35.72% |
| All Indica | 791 | 38.43% | 61.57% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 28.57% | 71.43% |
| Indica II | 211 | 39.81% | 60.19% |
| Indica Intermediate | 209 | 54.55% | 45.45% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619860021 | A->G | INTERGENIC | None |