Detailed information of SNP:
|
SNP ID:
sf0619885635(Gbrowse)
Chromosome: chr06 Position: 19885635 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 51.48% | 48.52% |
| All Indica | 770 | 25.19% | 74.81% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 66 | 15.15% | 84.85% |
| Indica I | 360 | 28.06% | 71.94% |
| Indica II | 205 | 23.90% | 76.10% |
| Indica Intermediate | 205 | 21.46% | 78.54% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619885635 | C->T | LOC_Os06g34140(LOC_Os06g34140.1) | INTRON |