Detailed information of SNP:
|
SNP ID:
sf0619885820(Gbrowse)
Chromosome: chr06 Position: 19885820 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 50.50% | 49.50% |
| All Indica | 770 | 78.70% | 21.30% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 359 | 76.04% | 23.96% |
| Indica II | 204 | 79.90% | 20.10% |
| Indica Intermediate | 207 | 82.13% | 17.87% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619885820 | G->A | LOC_Os06g34140(LOC_Os06g34140.1) | INTRON |