Detailed information of SNP:
|
SNP ID:
sf0619886925(Gbrowse)
Chromosome: chr06 Position: 19886925 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 53.97% | 46.03% |
| All Indica | 779 | 82.93% | 17.07% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 363 | 82.64% | 17.36% |
| Indica II | 210 | 81.90% | 18.10% |
| Indica Intermediate | 206 | 84.47% | 15.53% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619886925 | T->C | LOC_Os06g34140(LOC_Os06g34140.1) | Synonymous |