Detailed information of SNP:
|
SNP ID:
sf0619887186(Gbrowse)
Chromosome: chr06 Position: 19887186 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1392 | 53.66% | 46.34% |
| All Indica | 772 | 83.68% | 16.32% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 363 | 83.75% | 16.25% |
| Indica II | 207 | 80.68% | 19.32% |
| Indica Intermediate | 202 | 86.63% | 13.37% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619887186 | G->A | LOC_Os06g34140(LOC_Os06g34140.1) | Synonymous |