Detailed information of SNP:
|
SNP ID:
sf0619890835(Gbrowse)
Chromosome: chr06 Position: 19890835 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1366 | 54.39% | 45.61% |
| All Indica | 762 | 27.03% | 72.97% |
| All Japonica | 495 | 97.37% | 2.63% |
| Aus | 56 | 48.21% | 51.79% |
| Indica I | 354 | 30.79% | 69.21% |
| Indica II | 208 | 25.48% | 74.52% |
| Indica Intermediate | 200 | 22.00% | 78.00% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 11 | 27.27% | 72.73% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619890835 | G->A | LOC_Os06g34140(LOC_Os06g34140.1) | Synonymous |