Detailed information of SNP:
|
SNP ID:
sf0619891258(Gbrowse)
Chromosome: chr06 Position: 19891258 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 55.10% | 44.90% |
| All Indica | 792 | 87.75% | 12.25% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 369 | 86.99% | 13.01% |
| Indica II | 212 | 86.32% | 13.68% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619891258 | G->A | LOC_Os06g34140(LOC_Os06g34140.1) | Synonymous |