Detailed information of SNP:
|
SNP ID:
sf0619893437(Gbrowse)
Chromosome: chr06 Position: 19893437 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1373 | 63.80% | 36.20% |
| All Indica | 757 | 85.07% | 14.93% |
| All Japonica | 497 | 28.57% | 71.43% |
| Aus | 66 | 81.82% | 18.18% |
| Indica I | 349 | 83.09% | 16.91% |
| Indica II | 207 | 85.99% | 14.01% |
| Indica Intermediate | 201 | 87.56% | 12.44% |
| Temperate Japonica | 335 | 36.42% | 63.58% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619893437 | A->G | LOC_Os06g34150(LOC_Os06g34150.1) | Synonymous |