Detailed information of SNP:
|
SNP ID:
sf0619893740(Gbrowse)
Chromosome: chr06 Position: 19893740 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1328 | 87.12% | 12.88% |
| All Indica | 720 | 78.19% | 21.81% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 56 | 80.36% | 19.64% |
| Indica I | 342 | 79.82% | 20.18% |
| Indica II | 189 | 74.60% | 25.40% |
| Indica Intermediate | 189 | 78.84% | 21.16% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619893740 | C->T | LOC_Os06g34150(LOC_Os06g34150.1) | Synonymous |