Detailed information of SNP:
|
SNP ID:
sf0619933915(Gbrowse)
Chromosome: chr06 Position: 19933915 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 92.36% | 7.64% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 486 | 79.63% | 20.37% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 332 | 84.94% | 15.06% |
| Tropical Japonica | 91 | 73.63% | 26.37% |
| Japonica Intermediate | 63 | 60.32% | 39.68% |
| Group VI/Aromatic | 10 | 80.00% | 20.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619933915 | T->C | INTERGENIC | None |