Detailed information of SNP:
|
SNP ID:
sf0619936085(Gbrowse)
Chromosome: chr06 Position: 19936085 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1374 | 54.88% | 45.12% |
| All Indica | 775 | 85.68% | 14.32% |
| All Japonica | 497 | 5.84% | 94.16% |
| Aus | 50 | 64.00% | 36.00% |
| Indica I | 366 | 88.52% | 11.48% |
| Indica II | 210 | 86.19% | 13.81% |
| Indica Intermediate | 199 | 79.90% | 20.10% |
| Temperate Japonica | 335 | 7.16% | 92.84% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619936085 | G->A | LOC_Os06g34240(LOC_Os06g34240.1) | INTRON |