Detailed information of SNP:
|
SNP ID:
sf0619938168(Gbrowse)
Chromosome: chr06 Position: 19938168 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 61.96% | 38.04% |
| All Indica | 797 | 93.22% | 6.78% |
| All Japonica | 490 | 4.08% | 95.92% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 210 | 89.52% | 10.48% |
| Temperate Japonica | 330 | 2.42% | 97.58% |
| Tropical Japonica | 92 | 8.70% | 91.30% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619938168 | A->T | LOC_Os06g34250(LOC_Os06g34250.1) | Non-Synonymous SNP |