Detailed information of SNP:
|
SNP ID:
sf0619954119(Gbrowse)
Chromosome: chr06 Position: 19954119 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1369 | 94.74% | 5.26% |
| All Indica | 750 | 91.60% | 8.40% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 96.37% | 3.63% |
| Indica II | 196 | 85.20% | 14.80% |
| Indica Intermediate | 196 | 89.29% | 10.71% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619954119 | G->C | INTERGENIC | None |