Detailed information of SNP:
|
SNP ID:
sf0619960714(Gbrowse)
Chromosome: chr06 Position: 19960714 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 90.50% | 9.50% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 494 | 75.71% | 24.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 83.28% | 16.72% |
| Tropical Japonica | 93 | 66.67% | 33.33% |
| Japonica Intermediate | 66 | 50.00% | 50.00% |
| Group VI/Aromatic | 11 | 72.73% | 27.27% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619960714 | T->C | LOC_Os06g34320(LOC_Os06g34320.1) | UTR_3_PRIME |