Detailed information of SNP:
|
SNP ID:
sf0619962147(Gbrowse)
Chromosome: chr06 Position: 19962147 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 95.97% | 4.03% |
| All Indica | 795 | 93.84% | 6.16% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 94.37% | 5.63% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 209 | 89.00% | 11.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619962147 | C->T | LOC_Os06g34320(LOC_Os06g34320.1) | Non-Synonymous SNP |