Detailed information of SNP:
|
SNP ID:
sf0620025945(Gbrowse)
Chromosome: chr06 Position: 20025945 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1340 | 96.42% | 3.58% |
| All Indica | 796 | 100.00% | 0.00% |
| All Japonica | 422 | 88.63% | 11.37% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 275 | 85.09% | 14.91% |
| Tropical Japonica | 82 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 89.23% | 10.77% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620025945 | G->T | LOC_Os06g34420(LOC_Os06g34420.1) | INTRON |