Detailed information of SNP:
|
SNP ID:
sf0620056034(Gbrowse)
Chromosome: chr06 Position: 20056034 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 61.50% | 38.50% |
| All Indica | 797 | 93.60% | 6.40% |
| All Japonica | 494 | 3.24% | 96.76% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 334 | 2.10% | 97.90% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 66 | 4.55% | 95.45% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620056034 | T->C | LOC_Os06g34460(LOC_Os06g34460.1) | INTRON |