Detailed information of SNP:
|
SNP ID:
sf0620056667(Gbrowse)
Chromosome: chr06 Position: 20056667 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 62.07% | 37.93% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 489 | 4.29% | 95.71% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 331 | 2.42% | 97.58% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 65 | 10.77% | 89.23% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620056667 | G->A | INTERGENIC | None |