Detailed information of SNP:
|
SNP ID:
sf0620079447(Gbrowse)
Chromosome: chr06 Position: 20079447 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1368 | 91.30% | 8.70% |
| All Indica | 765 | 92.55% | 7.45% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 55 | 7.27% | 92.73% |
| Indica I | 348 | 91.67% | 8.33% |
| Indica II | 206 | 87.86% | 12.14% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620079447 | A->C | LOC_Os06g34500(LOC_Os06g34500.1) | Non-Synonymous SNP |