Detailed information of SNP:
|
SNP ID:
sf0620085976(Gbrowse)
Chromosome: chr06 Position: 20085976 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 62.46% | 37.54% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 490 | 6.33% | 93.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 331 | 7.55% | 92.45% |
| Tropical Japonica | 93 | 4.30% | 95.70% |
| Japonica Intermediate | 66 | 3.03% | 96.97% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620085976 | T->C | INTERGENIC | None |