Detailed information of SNP:
|
SNP ID:
sf0620100207(Gbrowse)
Chromosome: chr06 Position: 20100207 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 64.10% | 35.90% |
| All Indica | 799 | 93.74% | 6.26% |
| All Japonica | 493 | 10.55% | 89.45% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 6.27% | 93.73% |
| Tropical Japonica | 92 | 20.65% | 79.35% |
| Japonica Intermediate | 66 | 18.18% | 81.82% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0620100207 | T->C | INTERGENIC | None |